Carrot Cake Muffins Recipe {with Cheesecake Filling} - Inside BruCrew Life (2024)

Published: · Modified: by Jocelyn · As an Amazon associate, I earn from qualifying purchases. This post may contain affiliate links · 65 Comments

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Love carrot cake? You are going to love these Carrot Cheesecake Muffins. The soft carrot cake muffins are stuffed with a cream cheese filling and make a delicious choice for breakfast, snack, or dessert.

Carrot Cake Muffins Recipe {with Cheesecake Filling} - Inside BruCrew Life (1)

Why This Recipe Works

Carrot cake with cream cheese frosting is one of my all time favorite cakes, so it just made sense to make these carrot cake muffins with a cream cheese filling.

As I was working on the recipe for these carrot cheesecake muffins, I had to make a few batches to get it absolutely perfect.

After a few test runs on the carrot cake muffins, I doubled the cheesecake center because more cheesecake is never a bad idea. Am I right?

The muffins are soft and moist and have a delicious cheesecake center that will have everyone reaching for more. Great breakfast recipe to make for Easter or Mother's day.


Carrot Cake Muffins Recipe {with Cheesecake Filling} - Inside BruCrew Life (2)

Recipe Ingredients

You can make these muffins using simple pantry ingredients. The cream cheese carrot cake muffins are soft and so delicious, and they will make you think you are eating carrot cake for breakfast. Oh, yeah!

For the Carrot Muffins

  • Oil, Eggs - Adds the moisture needed for the batter.
  • Buttermilk - Gives a softer texture to the muffin and provides a slight and delicious tang.
  • Sugars - Granulated and brown sugar sweeten these muffins.
  • Flour, Salt - Adds structure and balances the sweetness.
  • Baking Powder, Baking Soda - Helps the muffins rise as they bake.
  • Cinnamon, Nutmeg, Anise, Orange Extract - Gives a spicy and delicious flavor.
  • Shredded Carrots - Make sure you use freshly shredded carrots because they have more moisture.
  • Chopped Pecans - Optional, but delicious.

For the Cream Cheese Filling

  • Cream Cheese - Make sure to set it out ahead of time, so you can beat it easily.
  • Sugar, Orange Extract - Sweetens and adds a little flavor.
  • Flour - Just a little bit helps the filling to be firm and not melt into the carrot muffin.

Carrot Cake Muffins Recipe {with Cheesecake Filling} - Inside BruCrew Life (3)

How to make Carrot Cheesecake Muffins

Follow our simple step by step instructions for this carrot cake muffins recipe. In no time at all you can have a batch of cheesecake muffins cooling on your counter.

For the Muffins

  1. Shred fresh carrots using a food processor or use a hand held grater.
  2. Mix the oil, sugars, extract, and eggs in a large mixing bowl.
  3. Stir together the dry ingredients and slowly mix them into the wet mixture.
  4. Add the buttermilk and shredded carrots and stir until mixed in.
  5. Divide the batter evenly into 18 greased muffin cavities. You will need a 12 count pan and a 6 count pan.

BRUCREW TIP: Do NOT buy the all ready shredded carrots that are available in the stores. Those are only for salads! They do not provide enough moisture for baked goods.

For the Cheesecake Filling

  1. Mix together the cheesecake ingredients until creamy.
  2. Spoon it into two large plastic baggies. Cut one tip off a corner of each bag.
  3. Use one bag to squeeze cheesecake down into the CENTER of the muffin batter. Use the second bag to add another swirl of cheesecake batter on TOP of the muffins.
  4. Sprinkle the outside edges with diced pecans. This is totally optional, but it really makes the muffins look a little prettier and taste so good.

Carrot Cake Muffins Recipe {with Cheesecake Filling} - Inside BruCrew Life (4)

FAQ'S

Do these carrot muffins with cheesecake need to be refrigerated?

If you are eating them within a day or two, you can keep them in a sealed container on the counter. Keep them in a container in the fridge for 4-5 days.

Can you freeze carrot cake muffins?

Yes, you can. Place the cooled muffins on a sheet pan in the freezer for an hour. Place them into a freezer safe bag or container and freeze for up to 3 months. Thaw in the refrigerator overnight.

CLICK HERE TO PIN THIS RECIPE FOR LATER!

Carrot Cake Muffins Recipe {with Cheesecake Filling} - Inside BruCrew Life (5)

Other cheesecake muffins

  • Pumpkin Cream Cheese Muffins (Starbucks copycat)
  • Chocolate Zucchini Muffins

More breakfast muffin recipes

  • Chocolate Banana Muffins
  • Chocolate Chip Muffins
  • Grab N Go Pancake Muffins
  • Chocolate Avocado Muffins
  • Banana Coconut Muffins
  • Monkey Bread Muffins
  • Apple Streusel Muffins

Carrot Cake Muffins Recipe {with Cheesecake Filling} - Inside BruCrew Life (6)

Recipe

Carrot Cake Muffins Recipe {with Cheesecake Filling} - Inside BruCrew Life (7)

Carrot Cheesecake Muffins Recipe

Yield: 18 muffins

Prep Time: 15 minutes

Cook Time: 15 minutes

Total Time: 30 minutes

Love carrot cake? You are going to love these Carrot Cheesecake Muffins. The soft carrot cake muffins are stuffed with a cream cheese filling and make a delicious choice for breakfast, snack, or dessert.

Ingredients

For the Muffins

  • ⅔ cup oil
  • ½ cup packed brown sugar
  • ¼ cup granulated sugar
  • 1 teaspoon orange extract
  • 2 large eggs
  • 2 ¼ cups all purpose flour
  • 1 teaspoon baking powder
  • 1 teaspoon baking soda
  • 2 teaspoons cinnamon
  • 1 teaspoon nutmeg
  • ½ teaspoon anise powder
  • ½ teaspoon salt
  • ½ cup buttermilk
  • 1 cup finely shredded carrots

For the Cheesecake Filling

  • 8 ounces cream cheese, softened
  • 4 Tablespoons granulated sugar
  • 1 teaspoon orange extract
  • 1 Tablespoon all purpose flour
  • ½ cup diced pecans

Instructions

  1. Preheat the oven to 400 degrees. Spray a 12 count muffin pan and a 6 count muffin pan with nonstick baking spray.
  2. Beat the oil, sugars, and extract until combined. Add the eggs and mix again.
  3. Stir together the flour, baking powder, baking soda, cinnamon, nutmeg, anise, and salt. Slowly add the dry ingredients into the egg mixture.
  4. Add the buttermilk and shredded carrots and stir until completely combined.
  5. Spoon the batter evenly into the prepared muffin tins.
  6. In a small bowl, mix together the cream cheese, sugar, orange extract, and flour. Spoon the mixture evenly into two large plastic baggies and cut one tip off each bag.
  7. Squeeze one bag of cheesecake evenly into the center of the muffin batter. Use the second bag of cheesecake to add a swirl of cheesecake to the top of the batter.
  8. Sprinkle the pecans around the outside of the muffin batter. Bake for 15-16 minutes.
  9. Remove and let cool in the pan for 2-3 minutes before gently removing them from the pan and placing on a wire rack.

Recommended Products

As an Amazon Associate and member of other affiliate programs, I earn from qualifying purchases.

Nutrition Information:

Yield: 18Serving Size: 1
Amount Per Serving:Calories: 252Total Fat: 16gSaturated Fat: 4gTrans Fat: 0gUnsaturated Fat: 11gCholesterol: 34mgSodium: 222mgCarbohydrates: 25gFiber: 1gSugar: 12gProtein: 4g

Nutrition facts are an estimate and are not guaranteed to be accurate. If you need special diet advice, please see a registered dietician.

Did you make this recipe?

Please leave a comment on the blog or share a photo on Pinterest

Carrot Cake Muffins Recipe {with Cheesecake Filling} - Inside BruCrew Life (10)

Carrot Cake Muffins Recipe {with Cheesecake Filling} - Inside BruCrew Life (11)

*The post for Carrot Cheesecake Muffins was originally published on September 24, 2012. The photos and post have been updated and republished on April 3, 2021.

More Muffins and Scones

  • Salted Caramel Scones
  • Raspberry White Chocolate Muffins
  • Pumpkin Cream Cheese Muffins
  • Orange Muffins

Carrot Cake Muffins Recipe {with Cheesecake Filling} - Inside BruCrew Life (16)

Carrot Cake Muffins Recipe {with Cheesecake Filling} - Inside BruCrew Life (17)

Jocelyn is the owner and creator of Inside BruCrew Life where she loves to share semi-homemade recipes with flair that anyone can recreate in their own kitchen. Jocelyn is married and has three kids. She loves to workout, enjoys trips to Disney, and relaxing at the beach.

Learn More About Jocelyn

Reader Interactions

Comments

    • Jocelyn

      No that would not work with this recipe. If you are wanting a carrot cake, check out a few of the ones I have on our site. We have a Loaded Carrot Cake https://insidebrucrewlife.com/loaded-carrot-cake/ Carrot Cake Bars https://insidebrucrewlife.com/easy-carrot-cake-bars/ and a Carrot Bundt Cake https://insidebrucrewlife.com/carrot-bundt-cake/ . I hope you find one you like!

      Reply

      • Donna LaCroix

        Thanks for your reply!

  1. Carm

    I've made these a few times now and they all go and everyone loves them.The frosting some people like the orange zest and some people don't but I love it. If you haven't made these with the frosting try it you won't be disappointed.

    Reply

  2. Gretchen Niver

    I always like to make bite-sized, mini-muffin treats. Do you think this recipe would work with mini-muffin tins?

    Reply

    • Jocelyn

      I think it would work just fine. I'm just not sure what your baking time will be with the smaller tin because I haven't tested it that way. I hope you enjoy the muffins!

      Reply

      • Marcella

        What can i use to substitute the orange extract?

      • Jocelyn

        You can use vanilla extract instead of the orange. I hope you enjoy the muffins!

  3. Ray

    Hi, these look amazing! I have been trying all kinds of cheese muffins recipes but my center "gets eaten" by the batter. I love thick cheese in the center. Minor issue, I don't like carrots muffins lol! I am wondering if this could be converted to a chocolate or Cinnamon batter and if it would work the same and stay firm in the center, or is it the carrot that keeps it firm?
    If you can help me convert this with the same success it would be amazing! (I saw your chocolate Zucchini recipe didn't have as much filling. Does the chocolate "eat" the filling?)
    Thanks so much for your time and help!

    Reply

    • Jocelyn

      The carrots and the zucchini are what give these particular recipes some moisture. The cream cheese centers in both are exactly the same. Sometimes the cheese center sinks further into the muffin...it just depends which one you get when you bite into it. Maybe the extra cocoa flour does help the cheese center stay up a little, but it's the same ratio. I also have a pumpkin version if you are interested in that one. https://insidebrucrewlife.com/pumpkin-cream-cheese-muffins-starbucks-copycat/

      Reply

  4. Maricar

    Hi! I tried making these for 3 times already but the muffin always sinks in the center. I wonder why. It tastes delicious though. But mine is always a bit uncooked at the top so I'm not sure if I should cook it a bit more.

    Reply

    • Jocelyn

      I'm sorry to hear that they are not turning out for you. I have not had mine sink before, so I'm not quite sure. It does sound like they may need to go a little longer though. All ovens do bake differently, so you could try baking them a minute or two longer.

      Reply

    • Tricia L

      Hi Maricar,
      I face this issue sometimes with my baking and I was told one of the reasons can be that 'maybe' we open the oven too much before the goods are completely finished.
      Meaning too much air gets in the oven and yes, it sounds like the muffins need to stay a bit longer. Or we take it out the oven quickly without ensuring the middle is fully baked.
      Just make sure the inside is cooked thoroughly using a toothpick and you can place foil over the pan for at least 15 mins when it's out to keep the top of the muffin moist.

      just sharing what works for me..Happy Baking

      Reply

  5. Delfina Briones

    Look delicious!

    Reply

  6. Kathryn Young

    Quick question: I am dying to make the Carrot Cheesecake Muffins; however, I do not have Anise Powder in my cupboard and I cannot even remember baking anything with anise powder ever in my lifetime. I am an old lady who used to have a bakery business and I bake all the time. Could I eliminate that altogether from the recipe or is that absolutely necessary? Thanks for your help. Kind of expensive for just a 1/2 teaspoon.

    Reply

    • Jocelyn

      Feel free to substitute cinnamon or all spice in place of the anise. It's really not that expensive...maybe 3-4 dollars at the grocery store or Walmart. I like the flavor with apple, carrot, or zucchini recipes, so I always keep it on hand.

      Reply

  7. Mandy

    I made these today but the cheesecake filling has all disappeared and I am left with muffins with a hole in the centre. They taste amazing but what can I do to rectify next time?

    Reply

    • Jocelyn

      Ok, so I'm completely baffled on that. I have made them so many times and never had the cheesecake disappear. Was your cheesecake filling thick when you squeezed it into the muffin batter? And did you add the filling to the muffins twice? I always squeeze half into the center of the batter, then the other half on top of the center of the batter.

      Reply

      • Mandy

        No it wasn’t very thick at all. I squeezed some into the muffin and then some on top. Was suggested that I should put an egg into it to bind it more. I will definitely try again hopefully it will be better next time

      • Jocelyn

        How soft was your cream cheese? If it was too warm, it would not be very thick. Mine is always thick enough to squeeze from the bag. Actually adding an egg would make the filling even runnier. I've never done that with these muffins and always had a creamy pocket of cheesecake in the center of the baked muffins. I even used it in these chocolate zucchini muffins and had them bake the same. https://insidebrucrewlife.com/chocolate-zucchini-cheesecake-muffins/

  8. Dora Cooper

    Can I use regular milk?

    Reply

    • Jocelyn

      You can, but I recommend buttermilk. It gives baked goods a better texture and taste.

      Reply

  9. April H

    These look great! Would there be any reason I can’t use fresh orange juice or zest instead of extract?

    Reply

    • Jocelyn

      Orange extract is very concentrated, so it gives a stronger flavor to the muffins. You could use orange juice and zest, but it might not be as strong. Let me know if you make them that way.

      Reply

  10. Aimee Shugarman

    LOVE these muffins! And the kids did too!

    Reply

  11. Toni

    I really loved these muffins! Perfect day starter!

    Reply

  12. Sarah Skaggs

    Delicious! We loved these!

    Reply

  13. Charity

    This is a brilliant idea! It's like carrot cake with cream cheese frosting for breakfast!

    Reply

  14. Allyson Zea

    These muffins are incredible! I could eat them EVERY DAY!

    Reply

  15. Natasha

    These did not turn out for me. Terrible. But it could just be me.

    Reply

    • Jocelyn Brubaker

      I am so sorry to hear that these didn't work for you. Every oven is different...I wonder if that had something to do with it.

      Reply

  16. iamahoneybee.com

    great twist on the original recipe!

    cinnamon toast crunsh is my favorite cereal. Love how the milk gets all cinnamony and sweet.

    Great looking muffins!

    Reply

    • Diane

      Can I add raisins and crushed pineapple to the muffin batter?

      Reply

      • Jocelyn

        That's a great idea, but I do think the added moisture of the pineapple will affect the bake time. Since I haven't made this particular recipe with pineapple, I can't give you an exact time. Definitely keep me posted if you try it this way.

  17. Amanda Eisenberg

    read the title outloud to co-workers and they are demanding that I bring them in by the end of the week! Great SRC pick 🙂

    Reply

  18. Colie's Kitchen

    Yummy that looks amazing!! I love carrots and cheesecake!!

    Reply

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